rs29397404 SNP Detail

Summary

• ID
  rs29397404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7163244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CCAAGCAAGA GGAAAAATGG
  S
  TTCAGTGCCT CACTCCGCCT CCCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38691596	mCV25196167	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss131649935	ENSMUSSNP1064349	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29397404					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7163244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	within coordinates
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	1573 bp distal
Rr442460	regulatory region 442460	53 bp distal
Rr442461	regulatory region 442461	643 bp proximal
Rr442462	regulatory region 442462	1680 bp proximal
Tssr106776	transcription start site region 106776	170 bp downstream
Tssr106777	transcription start site region 106777	196 bp downstream
Tssr106778	transcription start site region 106778	291 bp downstream
Tssr106779	transcription start site region 106779	572 bp downstream
Tssr106780	transcription start site region 106780	606 bp downstream
Tssr106781	transcription start site region 106781	671 bp downstream
Tssr106782	transcription start site region 106782	699 bp downstream
Tssr106783	transcription start site region 106783	925 bp downstream