rs29397579 SNP Detail

Summary

• ID
  rs29397579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA AGAGGGCATC AGATTTCCTT
  M
  CGAATGGTTG TGAGCCACCA TGTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38696767	mCV24309753	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss132548828	ENSMUSSNP3338742	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323783376	CHEV_11_88832736	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29397579					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862248 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	1235 bp upstream
Gm10367	predicted gene 10367	954 bp downstream
Rr402857	regulatory region 402857	1074 bp downstream
Tssr104058	transcription start site region 104058	1159 bp downstream