rs29397592 SNP Detail

Summary

• ID
  rs29397592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTCACCCA GGATGGATGG AGGCTTGGGG TGGATGGAGG
  TATCCGGTAG GCAGCCAGAG CTGGGCCAGG GGACTGGAGA ACCAAGGACA ACTCTAACAC
  W
  GTGGGCTCCC AACTGGTTTC CTATCTCTCC CCACACATAT TCATCCTCTT TGCTCACTCT
  TCTCTCATTC TTTCCAACCA ATACATCCTT CTCCCTCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38687821	mCV24154612	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss132350028	ENSMUSSNP5976724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss323727817	CHEV_11_68971008	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29397592					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048332 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	171 bp distal
Rr449891	regulatory region 449891	507 bp distal
Rr449892	regulatory region 449892	236 bp distal
Rr449893	regulatory region 449893	603 bp proximal
Tssr102419	transcription start site region 102419	605 bp downstream
Tssr102420	transcription start site region 102420	590 bp downstream
Tssr102421	transcription start site region 102421	455 bp downstream
Tssr102422	transcription start site region 102422	445 bp downstream
Tssr102423	transcription start site region 102423	425 bp downstream
Tssr102424	transcription start site region 102424	396 bp downstream