rs29397969 SNP Detail

Summary

• ID
  rs29397969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69804238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGGGCCTCAA GCCCAGGACT CTTGAATGAC GACTGCCTCC ACCTCATTCC
  Y
  GTGACTGAGA GCATGTCCAG TGCTGTCCTG GCAAGGAGGA GCACGTAGGC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38694015	mCV23933154	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132362914	ENSMUSSNP613382	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323732160	CHEV_11_69726914	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29397969					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69804238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	within coordinates
Gps2	G protein pathway suppressor 2	476 bp upstream
Neurl4	neuralized E3 ubiquitin protein ligase 4	within coordinates
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	375 bp upstream
Tssr102552	transcription start site region 102552	596 bp upstream
Tssr102553	transcription start site region 102553	740 bp upstream
Tssr102554	transcription start site region 102554	767 bp upstream
Tssr102555	transcription start site region 102555	824 bp upstream
Tssr102556	transcription start site region 102556	874 bp upstream