rs29398012 SNP Detail

Summary

• ID
  rs29398012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99870245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTAGGA GCCCTGGACG
  AGGCCGCCAC TGGGAGTTTT CTTTGCCGAA TTTGGATGCA CTCTGGGATG AGCTGTCTCT
  TTTACAGGTT GTTCCTCAGC CTCACCAAAG CAAGCTTTTC CTCAGTACCC TCTCATCAGG
  AGGCCTCCTC CAAGAGGAAG CCGCTCTTCC TCCAGGACGC AGTTCTGTGC CATCAGATGC
  R
  GTGGAGTGCT GACAGTATTC AAAGAGAAGG TGTGATATCA AAAATGAAGA ACAGAAAACT
  AGTCTGTGGA CCGCAAGAAT GTTTATGCGT GTCCCCCTCT CCCTAGAATC TTCACATCAG
  CATTTTGAAC TTAACTCCGG AGTTGCTGCC AACAATTAAC AGCTGTAATG ACCTCCCTTA
  GCACAGCTAC CATCCTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38690056	mCV22959502	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss132715965	ENSMUSSNP5415116	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29398012					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99870245 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	366 bp upstream
Tssr110719	transcription start site region 110719	316 bp upstream