rs29398279 SNP Detail

Summary

• ID
  rs29398279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGTGTC CTGAGCACCT
  CTGATACATT GGTTAGCCCT CACTGCAGCT CTGAGAGGTA GATGTTAGCA TTTACCTTCA
  TCTTACAAAT GAAACCCTGG GACCTAGCAG AGGTAACTCA CCCCATCCCA CCACTGTTGG
  GTAGGGGGAC CGTGATTTGT ACCTGTTGTG TTGGTTCCAG AAGCCCTGTT GCTAACCTAG
  Y
  TAGTGTTGTA ACTCCTGCCC CATCTAAGTT ATCCCTAAAG ATGGAGCTGC CTTGTAGATA
  TTTTGGCTCA GATGGTATAA GCAGTACATT TAATGCTTAA AATATTTTCA TAAGCAACCG
  GGGGGTGAAG GGAATGACTC ACTTGGTAAA GTGTATGCTG TGCAGACATT AGGACCTGAG
  TTTAGACACC CAGCACCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38692086	mCV24752475	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132681480	ENSMUSSNP6102375	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323821008	CHEV_11_96405211	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29398279					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434723 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	124 bp distal
Rr252639	regulatory region 252639	1879 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1463 bp downstream
Tssr104543	transcription start site region 104543	822 bp upstream
Tssr104544	transcription start site region 104544	1476 bp upstream
Tssr104545	transcription start site region 104545	1529 bp upstream
Tssr104546	transcription start site region 104546	1537 bp upstream
Tssr104547	transcription start site region 104547	1579 bp upstream
Tssr104548	transcription start site region 104548	1673 bp upstream
Tssr104549	transcription start site region 104549	1686 bp upstream
Tssr104550	transcription start site region 104550	1744 bp upstream
Tssr104551	transcription start site region 104551	1772 bp upstream
Tssr104552	transcription start site region 104552	1793 bp upstream