rs29398807 SNP Detail

Summary

• ID
  rs29398807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96189064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG AGCTGTGCTG GGCATACGGA
  Y
  GGTCGGCTTG CCAAATAGCA ATAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38690408	mCV27575682	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29398807					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96189064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	687 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	443 bp proximal
Tssr3658	transcription start site region 3658	1015 bp upstream
Tssr104480	transcription start site region 104480	516 bp upstream
Tssr104481	transcription start site region 104481	546 bp upstream
Tssr104482	transcription start site region 104482	567 bp upstream
Tssr104483	transcription start site region 104483	808 bp upstream
Tssr104484	transcription start site region 104484	851 bp upstream
Tssr104485	transcription start site region 104485	874 bp upstream
Tssr104486	transcription start site region 104486	899 bp upstream
Tssr104487	transcription start site region 104487	969 bp upstream
Tssr104488	transcription start site region 104488	985 bp upstream