rs29399138 SNP Detail

Summary

• ID
  rs29399138
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104498683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACCAGGA GGAAAGCAAA
  CTGAGCCCGG TGAAGTGAAA TAGCAGTGTT GATGTCTCTG CGGAGGTGGG ACTAGCAGAG
  TCCAGGAAGT GACCCAAAGC TTTTTTTTTC TTCTTTTTTT AAACCGAGCA CCCAGGCGCA
  GACACCTGGG ACCCAGATGC ACACAGGACC CCGGGGGGCG CGGTCTCCTC TAGTGAACGC
  S
  GGCAGGTCCT CGTGGGCGGG GGGCTGGGGA AGATTGCAAA GTTTACCCAT CACACTCAGC
  CTCAGGCAGG GTCCAGGCGT GAGCCGGAGG GAGGGAGCGC GAGCACTCCG CCCGCCCCGC
  TGTGTCCCAC CCACCCCGTC CCCTCCCTTC TTCCCTCCCC TCCGCAGGAA AAGCAGCTGC
  GGGTGCCAGG CTCGCCGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38699125	mCV24560035	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss132755764	ENSMUSSNP3904238	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29399138					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104498683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	within coordinates
Itgb3	integrin beta 3	143 bp upstream
Rr403025	regulatory region 403025	22 bp upstream
Rr457855	regulatory region 457855	within coordinates
Rr457856	regulatory region 457856	1537 bp proximal
Rr457857	regulatory region 457857	1993 bp proximal
Tssr105409	transcription start site region 105409	45 bp downstream
Tssr105410	transcription start site region 105410	143 bp upstream
Tssr105411	transcription start site region 105411	169 bp upstream
Tssr105412	transcription start site region 105412	183 bp upstream