rs29399227 SNP Detail

Summary

• ID
  rs29399227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58275673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGACGCTG CTCTCCCCGA AACTTCTCCG GGTGCTAACC GTCTGTGCTT GCCTTGCTGC
  AGGAGGGTTC CTGCATGTGT ACCAGAACAA GTTCTGCTCC GAATCGAATT GCACCAAGAA
  CAGCACAGAG GTGGCCTTCA CTGTCCATCT ATTTGATGAC CAAAGATACC ATTTTGCAAG
  CCAGTGCTGC CAAGGAGAGT CCTGCAATGC CACCCACTCT GGTCTGTACA GGGCCCAGCA
  GCCTGTCCTG GGCCACACCC TCACACCCCA CTCTTGCTTT TCTGCTTGCT TTGCTTGTCT
  R
  GGGGGTGGAT GTCTCCAGTC CAGGCACTTC TGCACCCAGT TGGATAACGT TAGCATCTGA
  CTTATAGCAG TTACATAAGA AACATGGGGG ATGTTAAAGC AGGTCAAACA CCCTGCTTTC
  CCTTCGGTGA AGACAGGGAT TTCATGGGCC ATTCTTGTGG CAAGCGAAGC AAATGCTCGT
  TAGTCATTTT TAAGTTTTGT GATCTCGGGG CCTCAACTAA GAAGTTCTTT GAGACAATGT
  CTCCCACAGT CTAGACTCAC CTCAAACTTG CTATGGACCC AAGGGTGGCC TTCACTCAGC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38698350	mCV25372110	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29399227					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58275673 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	227 bp downstream
Tssr101736	transcription start site region 101736	159 bp downstream
Tssr101737	transcription start site region 101737	119 bp downstream
Tssr101738	transcription start site region 101738	101 bp downstream
Tssr101739	transcription start site region 101739	1876 bp upstream
Tssr101740	transcription start site region 101740	1940 bp upstream
Tssr101741	transcription start site region 101741	1968 bp upstream
Tssr108157	transcription start site region 108157	1923 bp downstream
Tssr108158	transcription start site region 108158	1975 bp downstream