rs29400017 SNP Detail

Summary

• ID
  rs29400017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTACATT CCAGCTCTGC
  ATTCTCTCTC TCCAGCTGCC TCACCTTCTC CATATAGGAG GCCAGGCGGT CATTCAGGAA
  CTGCATGGTC TCCTTCTCAT TGCCATTGAA GGAGCCCTCA CAGAACCAAT TGCAGTTGCC
  CACATTGGCG GGGATGTTGC AGGCCCCAGG CAGGGTGCAG CCATGGCAGC TGGGGGGCAC
  R
  CAGGGCCGGG AGGAGCAGCT GGTGCGGCAG CTCAGGGCCG GCAGGCAGCA ATTGTATGGC
  ATGGTGCTGG AGGGAGGGAG AGAGGTACCT GGCTGAAGAC TCGGTGTGAA TTCTCCAAGC
  CTCAGAGCTC TGAGTCTCCT TCCCTTGGTG AGACTTTATA AGCCTTCTAC AGAGGGTGTG
  GACACAGTAT GTAACATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss38700041	mCV22957216	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss132717778	ENSMUSSNP4264085	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29400017					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941246 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	457 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	303 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	239 bp proximal
Gm11571	predicted gene 11571	1866 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1684 bp upstream
Tssr104895	transcription start site region 104895	1840 bp upstream
Tssr104896	transcription start site region 104896	1861 bp upstream
Tssr110726	transcription start site region 110726	122 bp downstream