rs29400048 SNP Detail

Summary

• ID
  rs29400048
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:110425139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT CAGTGTGCGT CTGTGGTGTG
  K
  ATTCACTTGG AGTCATTTAA TAGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38699619	mCV25262228	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss132792021	ENSMUSSNP1820049	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323847519	CHEV_11_110395627	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29400048					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:110425139 () rs orientation: forward

Symbol	Name	Function Class
Gm11682	predicted gene 11682	1617 bp upstream
Gm30009	predicted gene, 30009	925 bp upstream
Gm74395	predicted gene, 74395	within coordinates
Tssr105717	transcription start site region 105717	1590 bp upstream
Tssr111604	transcription start site region 111604	1038 bp upstream