rs29401122 SNP Detail

Summary

• ID
  rs29401122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88433260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCACGTGTC TGTCGTCTTT GTCTACCAGA AGCTCCTTGC CAATGACAAA AACTGCACAT
  CATCTTTGTG TCCCCATGGA CTGTAAACGT AGAGATGCAC ACAGTAGTCA GACACTATTG
  CTAGTGGGAG ATGGGTGATC CAAGCTAGGA TTCGGATGCC CAGAGACTCC TTAGTTTACA
  CGCAGTGTAA GGTACACAAA GGAAACCTTC TTGGGGGATG TTTCATATCA GTCACACCTC
  AGCTGCGGAT GTGGTGTGTG ACTGTTGCGG GTGAGTGCAC TTGTGTGTAT GTGTGTGGGG
  K
  GGGGGGGCAA CATGTGGATA CAAGAGTGCG TGCATGCATG CAAAGGATGG GATAAACCCC
  AAGTTTCTCC GTGGTTATCT GGCAGATCAC CACGGAAAGA GACAGGCTCA GCTAAGCTCA
  CGATGCAGCC CTACTTCTCA AGAATACACA GGAGACCAAC GATTCACATC TGTAGCTGTG
  GGCTGCCCCA TACTGTGGCC TCCACTGCTC TCCATCCCCC TCCACCCTCC ACTGTCTCAG
  TCCCACATCA CCTCACCTCT CAAGAACATG TCTGTTTGCT TTGGACTTGC TATACACAGA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38704780	mCV23128080	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29401122					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88433260 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Rr454129	regulatory region 454129	1843 bp distal
Rr454130	regulatory region 454130	269 bp distal
Tssr110017	transcription start site region 110017	1966 bp upstream
Tssr110018	transcription start site region 110018	788 bp upstream