rs29401325 SNP Detail

Summary

• ID
  rs29401325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87685530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATC TCCCCTTCCC CTGGATAGGC
  Y
  TCCTTTGCTT TGGGGCCTGA TGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38703352	mCV22737729	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132512855	ENSMUSSNP4129882	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323773648	CHEV_11_87608206	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29401325					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87685530 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	860 bp downstream
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	157 bp downstream
Rr453904	regulatory region 453904	1447 bp proximal
Rr453905	regulatory region 453905	1501 bp proximal
Tssr3631	transcription start site region 3631	46 bp upstream
Tssr3632	transcription start site region 3632	558 bp upstream
Tssr3633	transcription start site region 3633	1609 bp upstream
Tssr103978	transcription start site region 103978	1289 bp downstream
Tssr103979	transcription start site region 103979	1259 bp downstream
Tssr103980	transcription start site region 103980	1221 bp downstream
Tssr103981	transcription start site region 103981	899 bp downstream
Tssr103982	transcription start site region 103982	876 bp downstream
Tssr103983	transcription start site region 103983	857 bp downstream
Tssr103984	transcription start site region 103984	672 bp downstream
Tssr103985	transcription start site region 103985	647 bp downstream
Tssr103986	transcription start site region 103986	633 bp downstream
Tssr103987	transcription start site region 103987	492 bp downstream
Tssr103988	transcription start site region 103988	168 bp downstream
Tssr103989	transcription start site region 103989	75 bp upstream
Tssr103990	transcription start site region 103990	509 bp upstream
Tssr103991	transcription start site region 103991	582 bp upstream
Tssr103992	transcription start site region 103992	603 bp upstream
Tssr103993	transcription start site region 103993	1079 bp upstream
Tssr103994	transcription start site region 103994	1151 bp upstream
Tssr103995	transcription start site region 103995	1327 bp upstream
Tssr103996	transcription start site region 103996	1379 bp upstream
Tssr103997	transcription start site region 103997	1549 bp upstream
Tssr103998	transcription start site region 103998	1656 bp upstream
Tssr109976	transcription start site region 109976	1717 bp downstream