rs29401521 SNP Detail

Summary

• ID
  rs29401521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC TTCAAGGAAC CTGTCACCAC
  Y
  CCGTGCGGCC ACAATTTCTG CATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38705539	mCV22657603	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss132549623	ENSMUSSNP3800242	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323783684	CHEV_11_88860880	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29401521					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	135 bp upstream
Rr386439	regulatory region 386439	1265 bp downstream
Rr402858	regulatory region 402858	1 bp downstream
Trim25	tripartite motif-containing 25	within coordinates
Tssr104062	transcription start site region 104062	132 bp downstream
Tssr104063	transcription start site region 104063	87 bp downstream