rs29401662 SNP Detail

Summary

• ID
  rs29401662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:86998916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC CCCAACCCCA CCCGGTTCTT
  Y
  CCTGTGTCTT TCTCAGAGTG ACCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38709823	mCV24278729	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C	T
ss132510976	ENSMUSSNP7224365	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss323772670	CHEV_11_86921592	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29401662					SNP	T	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86998916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3483	CpG island 3483	625 bp proximal
Gm73625	predicted gene, 73625	1422 bp upstream
Prr11	proline rich 11	Intron
Rr369312	regulatory region 369312	549 bp upstream
Rr453746	regulatory region 453746	5 bp proximal
Rr453747	regulatory region 453747	608 bp proximal
Rr453748	regulatory region 453748	1433 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2	1171 bp upstream
Tssr103905	transcription start site region 103905	1091 bp upstream
Tssr103906	transcription start site region 103906	1131 bp upstream
Tssr103907	transcription start site region 103907	1162 bp upstream
Tssr103908	transcription start site region 103908	1470 bp upstream
Tssr109946	transcription start site region 109946	566 bp downstream
Tssr109947	transcription start site region 109947	646 bp downstream
Tssr109948	transcription start site region 109948	676 bp downstream