rs29401736 SNP Detail

Summary

• ID
  rs29401736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7163076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GGTTACACAG ACCTAAACCT
  R
  GGTATCCCCG CTCAGCGAGG AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38703229	mCV25196178	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss131649929	ENSMUSSNP2267089	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29401736					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7163076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	within coordinates
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	1405 bp distal
Rr442460	regulatory region 442460	within coordinates
Rr442461	regulatory region 442461	811 bp proximal
Rr442462	regulatory region 442462	1848 bp proximal
Tssr106776	transcription start site region 106776	338 bp downstream
Tssr106777	transcription start site region 106777	364 bp downstream
Tssr106778	transcription start site region 106778	459 bp downstream
Tssr106779	transcription start site region 106779	740 bp downstream
Tssr106780	transcription start site region 106780	774 bp downstream
Tssr106781	transcription start site region 106781	839 bp downstream
Tssr106782	transcription start site region 106782	867 bp downstream
Tssr106783	transcription start site region 106783	1093 bp downstream