rs29402012 SNP Detail

Summary

• ID
  rs29402012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85061675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCAATA AGCCTCCGGA ATAACTGCGG AGTGGTGTCC
  ATCCAGGAAA ATTACTTCAG AAACTTTACC GAGGTTTAAA ATCAATAGCT TCTGGCCAGA
  S
  GTGTGCCATT TGGTCCTAGT CAGCTGTAAG CACTGACACA CAACCCCCCC AAAAAAAAGT
  GGGGTGGGGG GGACAGCACA CGTGGCTCAC TGACTTACC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38707809	mCV24662612	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss132490461	ENSMUSSNP7000444	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29402012					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85061675 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	within coordinates
Cpgi3451	CpG island 3451	467 bp distal
Gm73307	predicted gene, 73307	within coordinates
Rr453329	regulatory region 453329	435 bp distal
Rr453330	regulatory region 453330	610 bp distal
Rr453331	regulatory region 453331	145 bp distal
Tssr3620	transcription start site region 3620	219 bp upstream
Tssr103818	transcription start site region 103818	225 bp upstream
Tssr103819	transcription start site region 103819	248 bp upstream