rs29402180 SNP Detail

Summary

• ID
  rs29402180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96184671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA TGTATGGATT TTGGTGGAGA
  M
  AATTGTATAT CTGCTATGGG CACAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss38708413	mCV27575647	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss132676642	ENSMUSSNP4619818	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29402180					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96184671 () rs orientation: forward

Symbol	Name	Function Class
2700088M07Rik	RIKEN cDNA 2700088M07 gene	1009 bp upstream
Cpgi3639	CpG island 3639	241 bp distal
Cpgi3640	CpG island 3640	692 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr386515	regulatory region 386515	1478 bp downstream
Rr455356	regulatory region 455356	1359 bp distal
Rr455357	regulatory region 455357	212 bp distal
Rr455358	regulatory region 455358	417 bp distal
Rr455359	regulatory region 455359	within coordinates
Rr455360	regulatory region 455360	848 bp proximal
Tssr104478	transcription start site region 104478	1686 bp downstream
Tssr104479	transcription start site region 104479	1337 bp downstream
Tssr110326	transcription start site region 110326	1560 bp downstream