rs29402299 SNP Detail

Summary

• ID
  rs29402299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGGACT CAGATCTCAA
  CCAAAGACTA GCCCTGGACT GCAGGATCTT CTTAGTCTAG CAAGTGTCTT CTTAGGAGAA
  TGAGGGGTCT CTGCTGGGCA GCTACTAGAG GTCTTCCTAA AGGTACATTT GACAGAGTGC
  TGCCAGGGGA AGCTAGGCCT CCTGGCAAGT CCCTGTACAG ACCTAGCCCC ACCAGAAAGC
  R
  AACAGCTAGC AAACAAGAGA CAGGCATGGG CAAGTGCAGG TCCCAGTTAC AAGTGTCTGG
  CTGAGAAAAT AGGAACCCTG GCCCCAAGCA GAAAGGGAAA CTCTACTGTG CCCCCCCAAA
  AGTATGAGTT TAGATGGGGA CGCTGGACCA TGCGCTGCTG GGCCATGCGA TGGGCACGGG
  AAGAGTGGGG TGAGGGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38708043	mCV22908209	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29402299					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017032 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	670 bp upstream
Cpgi2551	CpG island 2551	515 bp distal
Cpgi2552	CpG island 2552	1239 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442230	regulatory region 442230	1505 bp distal
Rr442231	regulatory region 442231	794 bp distal
Rr442232	regulatory region 442232	1003 bp proximal
Rr442233	regulatory region 442233	1498 bp proximal
Tssr106682	transcription start site region 106682	1397 bp upstream
Tssr106683	transcription start site region 106683	1369 bp upstream
Tssr106684	transcription start site region 106684	1344 bp upstream
Tssr106685	transcription start site region 106685	1304 bp upstream
Tssr106686	transcription start site region 106686	1277 bp upstream
Tssr106687	transcription start site region 106687	1253 bp upstream
Tssr106688	transcription start site region 106688	1121 bp upstream
Tssr106689	transcription start site region 106689	912 bp upstream
Tssr106690	transcription start site region 106690	895 bp upstream
Tssr106691	transcription start site region 106691	667 bp upstream
Tssr106692	transcription start site region 106692	648 bp upstream
Tssr106693	transcription start site region 106693	621 bp upstream