rs29403139 SNP Detail

Summary

• ID
  rs29403139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67856597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC TTCCTTAGTA TGTATTTTAT
  Y
  CATTCTGGAA ATGTAGGTGG TAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38709491	mCV22349852	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132335737	ENSMUSSNP2214730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T		T
ss323722466	CHEV_11_67779273	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29403139					SNP	C	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67856597 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	120 bp upstream
Cpgi3072	CpG island 3072	92 bp distal
Cpgi3073	CpG island 3073	553 bp proximal
Rr449568	regulatory region 449568	1455 bp distal
Rr449569	regulatory region 449569	within coordinates
Rr449570	regulatory region 449570	720 bp proximal
Stx8	syntaxin 8	640 bp upstream
Tssr102288	transcription start site region 102288	671 bp upstream
Tssr108559	transcription start site region 108559	141 bp upstream
Tssr108560	transcription start site region 108560	108 bp upstream