rs29403162 SNP Detail

Summary

• ID
  rs29403162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72907916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGAGCTA CTGTTGGGGT AGAGAGATGG CTCAGTGGTT
  GAGAGCACAT GCTGTTCTTA CAGGGGAGCC AGATTCAGTT CCCAGCACCC ACACAGTGGC
  Y
  CACAACTCTC CGTAAGCACA CACAGATGCA CATATAGGCA TACATGTAGG CAAAACAGTC
  ACCCACATAA AATAAAGAGT TAGCATCGAC CCTTCATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38706271	mCV23952895	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss132418975	ENSMUSSNP2842248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29403162					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72907916 () rs orientation: forward

Symbol	Name	Function Class
4732414G09Rik	RIKEN cDNA 4732414G09 gene	within coordinates
Camkk1	calcium/calmodulin-dependent protein kinase kinase 1, alpha	1918 bp upstream
Cpgi3228	CpG island 3228	1405 bp proximal
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	1890 bp downstream
Rr247151	regulatory region 247151	1084 bp proximal
Rr369285	regulatory region 369285	1696 bp downstream
Rr402708	regulatory region 402708	1641 bp upstream
Tssr102875	transcription start site region 102875	1896 bp upstream