rs29403432 SNP Detail

Summary

• ID
  rs29403432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC CCCCAAACTG GCACCTTTTC
  Y
  AGTGTCCCTC AGGGCTATTG TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38706464	mCV27576772	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132675290	ENSMUSSNP5016350	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29403432					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1409 bp proximal
Gm11538	predicted gene 11538	1605 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56413	predicted gene, 56413	1538 bp upstream
Rr386513	regulatory region 386513	1091 bp downstream
Rr455321	regulatory region 455321	370 bp distal
Rr455322	regulatory region 455322	within coordinates
Rr455323	regulatory region 455323	524 bp proximal
Rr455324	regulatory region 455324	1003 bp proximal
Rr455325	regulatory region 455325	1608 bp proximal
Tssr104437	transcription start site region 104437	1592 bp upstream