rs29403479 SNP Detail

Summary

• ID
  rs29403479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88900857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG TACTTGGGGG GATGGTTATG
  R
  GGGACTCTTG GGAGCATCTT ACTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38705673	mCV22658233	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132549883	ENSMUSSNP1544168	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323783760	CHEV_11_88871345	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29403479					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88900857 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	158 bp distal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104065	transcription start site region 104065	1902 bp downstream
Tssr104066	transcription start site region 104066	862 bp upstream
Tssr104067	transcription start site region 104067	938 bp upstream