rs29403549 SNP Detail

Summary

• ID
  rs29403549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4218414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA AGGGGGGGGC TGCCTGGCCC
  R
  GAGGGGTGCC CTTCAGAGCT GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38707920	mCV22900105	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29403549					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4218414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	1284 bp distal
D11Mit16	DNA segment, Chr 11, Massachusetts Institute of Technology 16	1146 bp proximal
D11Mit16.1	DNA segment, Chr 11, Massachusetts Institute of Technology 16.1	1086 bp proximal
D11Mit16.2	DNA segment, Chr 11, Massachusetts Institute of Technology 16.2	1280 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	220 bp downstream
Rr441799	regulatory region 441799	1309 bp distal
Rr441800	regulatory region 441800	778 bp distal
Rr441801	regulatory region 441801	152 bp proximal
Tssr100122	transcription start site region 100122	1917 bp downstream
Tssr100123	transcription start site region 100123	1870 bp downstream
Tssr100124	transcription start site region 100124	1741 bp downstream