rs29403560 SNP Detail

Summary

• ID
  rs29403560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7163224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGGAA TGAAAACCCA
  GGTCAACAGC TGGGTTACAC AGACCTAAAC CTGGGTATCC CCGCTCAGCG AGGAGACTCT
  CCAGTGACTG GGATCTGTCC ACTGGCAGTC TCCCTTGCTA CCCGCTCGTC CTGGCACTGA
  ATTCTACCTA TTTTCACAGA GCGCATTTTG CAACTTATAA GAAAAGCTGT ACTTTGAGAA
  Y
  CAAGCAAGAG GAAAAATGGG TTCAGTGCCT CACTCCGCCT CCCAGGGTCC ATTTTCCAAC
  CTTCAATATG AGCCAAGACA AACATCTGAA GATACACTCC CTGCCACCCT CGTCGGGTCC
  CAGGGAGTTG CGCGTGGCGC ACGTGGCAGG GACAGCTTAC CTGGAGCAGG TTGGGAGGGG
  AGGTAGGTGC TTAGGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38710348	mCV25196177	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss131649932	ENSMUSSNP3905785	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29403560					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7163224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	within coordinates
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	1553 bp distal
Rr442460	regulatory region 442460	33 bp distal
Rr442461	regulatory region 442461	663 bp proximal
Rr442462	regulatory region 442462	1700 bp proximal
Tssr106776	transcription start site region 106776	190 bp downstream
Tssr106777	transcription start site region 106777	216 bp downstream
Tssr106778	transcription start site region 106778	311 bp downstream
Tssr106779	transcription start site region 106779	592 bp downstream
Tssr106780	transcription start site region 106780	626 bp downstream
Tssr106781	transcription start site region 106781	691 bp downstream
Tssr106782	transcription start site region 106782	719 bp downstream
Tssr106783	transcription start site region 106783	945 bp downstream