rs29403612 SNP Detail

Summary

• ID
  rs29403612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCCAGC AAGGCAAGAG
  ATAGCCCAAA GAGGTCTCCA CTAGCAAAAA AAAAAAAAAT CACTTTATAT TAAACATGGA
  GCAAATTGGC TTTACAGTTT GTAACGTATC CATGTGTTGG CTTTAACATT AAAAATCGCT
  TTGAAATTTC TAGTTAAACG TTCTACCCTT CTGTCTAGTT CTCCTAGTTC AATACATGTA
  R
  ACTCAGTGCT TTGCTCTGGG CATCCAAGCT CCAGCTTGGA TGTGCATACA GATGTTCTAA
  GGACCGAAGG TTCAAAAGCA TGAAAGAGGG GCTACATTAT ATCATTGAAT CCAAGGGCTT
  AGATGCTAGG AAAGAAAATA TTGAAATGCC CTGAAATCAC AGGACTATTC TTTAGCAGGA
  GTGCCAAGCT AGAAATGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38709773	mCV22957204	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss132717806	ENSMUSSNP2283282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss323830623	CHEV_11_99912968	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29403612					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942480 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	633 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	618 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	767 bp distal
Gm11571	predicted gene 11571	632 bp upstream
Krt31	keratin 31	1103 bp upstream
Tssr104894	transcription start site region 104894	450 bp upstream
Tssr104895	transcription start site region 104895	606 bp upstream
Tssr104896	transcription start site region 104896	627 bp upstream
Tssr110726	transcription start site region 110726	1097 bp upstream