rs29403665 SNP Detail

Summary

• ID
  rs29403665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32200099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGAGCCA ACTTAGAGCA TTATCTGAAA TTGCCTCAAA
  ACAAAGCAGA ATGACCAGTT GGTCCTCTAG AGATACTACA CAAAGAGAAG CCATCAGACT
  Y
  GAGCTCAGCA GGCTGCTGCA CTTACCATCA GCCATAGCAG ACACCTCATC CTGAAGTGCT
  AGGATCAGCT TGGCCTCTCG AGTGAGGTAC TGGCAGCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38707548	mCV23784212	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss131932909	ENSMUSSNP3047738	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29403665					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32200099 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	705 bp proximal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	710 bp proximal
Rr1084	regulatory region 1084	353 bp proximal
Rr444551	regulatory region 444551	1462 bp distal
Rr444552	regulatory region 444552	225 bp proximal