rs29404026 SNP Detail

Summary

• ID
  rs29404026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG TCCAGAAGAC TGGGTTTTGA
  Y
  TCCTAGGGAG ACTGAGGTGG AAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38706927	mCV24681313	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132877496	ENSMUSSNP2673580	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29404026					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1344 bp proximal
Rr369445	regulatory region 369445	1233 bp upstream
Rr459966	regulatory region 459966	92 bp distal
Rr459967	regulatory region 459967	1220 bp proximal
Rr459968	regulatory region 459968	1766 bp proximal
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr111780	transcription start site region 111780	1333 bp downstream
Tssr111781	transcription start site region 111781	1358 bp downstream
Tssr111782	transcription start site region 111782	1374 bp downstream
Tssr111783	transcription start site region 111783	1392 bp downstream
Tssr111784	transcription start site region 111784	1724 bp downstream
Tssr111785	transcription start site region 111785	1756 bp downstream
Tssr111786	transcription start site region 111786	1864 bp downstream
Tssr111787	transcription start site region 111787	1891 bp downstream