rs29404280 SNP Detail

Summary

• ID
  rs29404280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73123456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGCCAGTC ATGGATGCTT AATTCAGACA GAACAGAGGT GGCACTGAGA CCAGCTGAGA
  GAAGGATTTG CTGTCCCTAG GTACAGGTTC AGGGAGGTAG AGATGGACCT CAGAGAGATA
  CAAGGTCTGG GGGGTTGTTT AAGAAAGACA GTTCAGTTTG GGAGGTGAAA AAGCTCTGGA
  GAGTTGGTGA TAGCAGATGC CAATAATGTG AACGAACTGA AGGCCACCCA ACTGTGCATT
  TGAAGTGTTT AGGATAATGA AGTTTAGACT CCCTATGTCT TACCACAATC TAAAAAAAAC
  R
  AGAACAAGCC CTTGGTATCC TAGGAACTGC AGCTAAAATG GAGCAGTGTG GTGAGGAATG
  GTTGCTAAGC CTGGCTCTCA TGCCCAGACT AGTCATGTGA TCTGAAAGTC ATGTGATCTG
  AATAACTGTC TAACACCTCC GAGTCACAGG TTTCTCTTCA GCCACTTGAG TATGACAGTC
  TTTGCTCCCC CTTGCTCAGG GTTGTTACTG GGCCTAGAGG TGGGTGTGGA GAAGCTCTTT
  GGTACCCCTT CTGCAGGGTG GCTGGGAGTT ACTGTGCTCT GATGACTCCA CTCTGGTCCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38710885	mCV25414637	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29404280					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73123456 () rs orientation: forward

Symbol	Name	Function Class
Trpv1	transient receptor potential cation channel, subfamily V, member 1	1662 bp upstream