rs29404509 SNP Detail

Summary

• ID
  rs29404509
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68919187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCACTCT GTGGACCAGG CTGACCATGA ACTCACAGAG
  ATCCACCTGC CTCTGCCTCC CAAGTGCTGG GTTCTGGGTT TAAAGTCATG CGCCACCACC
  S
  GGCTAACTGA CTTTCTAATT AGACTGCTGT ATCTGTTCCT GCCCTTCACT GATTTGTCCT
  TTTTACAGCA ACTAGGAAGA ATGAAAGAAA TTGTAGCTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38710562	mCV23351341	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss323727067	CHEV_11_68841863	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29404509					SNP	C	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68919187 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	414 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr251244	regulatory region 251244	1414 bp proximal
Rr253641	regulatory region 253641	389 bp proximal
Rr386226	regulatory region 386226	235 bp downstream
Tssr102359	transcription start site region 102359	1527 bp downstream
Tssr102360	transcription start site region 102360	1238 bp downstream
Tssr102361	transcription start site region 102361	1025 bp downstream
Tssr102362	transcription start site region 102362	1002 bp downstream
Tssr102363	transcription start site region 102363	379 bp downstream