rs29404512 SNP Detail

Summary

• ID
  rs29404512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69911466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCTAACTT GTCATCACCT TTGTGCAGAT AGGAAACCCA
  TTGGAATATG TGGGTTCTCC TAACGCATGA GCACATGAAA TCCAGTAAGG GTGAGGGGCT
  Y
  CGCAGCACTG GTTAACTATT CTGGGTGGAT GCATTTATTC ATTTTTCTGC CCCAAATTCC
  TGTGTGTTCG ATGGAGCACA TGATTGAGCA GCCCTGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38710570	mCV22952703	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss132364019	ENSMUSSNP611343	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss323732616	CHEV_11_69834142	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29404512					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69911466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	615 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	155 bp upstream
Rr402686	regulatory region 402686	521 bp upstream
Rr450197	regulatory region 450197	1751 bp distal
Rr450198	regulatory region 450198	326 bp proximal
Rr450199	regulatory region 450199	761 bp proximal
Rr450200	regulatory region 450200	1383 bp proximal
Tssr102633	transcription start site region 102633	1793 bp downstream