rs29404719 SNP Detail

Summary

• ID
  rs29404719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95720936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC AGGAGCCTGG CTCCTCCATT
  Y
  ATTCTTGATC CCAGGGGGAT CACGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38712085	mCV23213460	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132668220	ENSMUSSNP1218859	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29404719					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95720936 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	101 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1627 bp distal
Rr455202	regulatory region 455202	571 bp proximal
Rr455203	regulatory region 455203	1782 bp proximal
Tssr3654	transcription start site region 3654	412 bp upstream
Tssr104394	transcription start site region 104394	643 bp upstream
Tssr104395	transcription start site region 104395	1214 bp upstream
Tssr104396	transcription start site region 104396	1251 bp upstream
Tssr104397	transcription start site region 104397	1414 bp upstream
Tssr110283	transcription start site region 110283	1691 bp downstream