rs29404821 SNP Detail

Summary

• ID
  rs29404821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88863021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT GAATCCTTGG CTTTTGAAAA
  Y
  GCTAGTTCAG AATGCAAAAG GATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
ss38712906	mCV24310037	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132548860	ENSMUSSNP6508526	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
rs29404821					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88863021 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	462 bp upstream
Coil	coilin	1740 bp upstream
Cpgi3523	CpG island 3523	1551 bp proximal
Gm10367	predicted gene 10367	181 bp downstream
Rr237596	regulatory region 237596	621 bp distal
Rr247482	regulatory region 247482	1179 bp proximal
Rr402857	regulatory region 402857	1847 bp downstream
Tssr104058	transcription start site region 104058	1932 bp downstream
Tssr104059	transcription start site region 104059	1724 bp upstream
Tssr104060	transcription start site region 104060	1733 bp upstream