rs29405421 SNP Detail

Summary

• ID
  rs29405421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69803240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGACCAAG TTGGCCTTGA ACCTAGAAAT TCTAATTCCA
  GTGCTGGGAT TAAACACATG GGCCACAGGG AATCAGATTC CATTATAGAT GGTTGTAAGC
  R
  GTGCTGGGAA TTGAACTCAG GACCTCTTGA AGAACAGCCA TCTCTCCAGC CCCTTTTGGT
  TTTTTTGTTT TTGTTTTTGT TTTTGTTTTT CTTAAAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss38713561	mCV23933152	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss132362902	ENSMUSSNP2475876	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323732159	CHEV_11_69725916	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29405421					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69803240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	926 bp proximal
Gps2	G protein pathway suppressor 2	1474 bp upstream
Neurl4	neuralized E3 ubiquitin protein ligase 4	within coordinates
Rr247070	regulatory region 247070	560 bp proximal
Rr402680	regulatory region 402680	1373 bp upstream
Tssr102550	transcription start site region 102550	1066 bp downstream
Tssr102551	transcription start site region 102551	1054 bp downstream
Tssr102552	transcription start site region 102552	1594 bp upstream
Tssr102553	transcription start site region 102553	1738 bp upstream
Tssr102554	transcription start site region 102554	1765 bp upstream
Tssr102555	transcription start site region 102555	1822 bp upstream
Tssr102556	transcription start site region 102556	1872 bp upstream