rs29405500 SNP Detail

Summary

• ID
  rs29405500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72907603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGTTGCA TTTGTTGTTG GTGGTGGTGG TAGGTTTTTT
  CCCCTTTCTT TCCTTTTTTT GTTTTGTTTT GCTTTGCTTT GTTTCGAGAT ACGTTTCTCT
  R
  TGTAGCCTTG GCTGTTCTGG AACTCGCTCT ATAGTCCAGG CTGGCCTTGA ACTTGGAGAT
  CTACCTGCGT CTGCCTCTGA GTGTTGGGAT TAAAGGGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38715897	mCV23952883	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29405500					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72907603 () rs orientation: forward

Symbol	Name	Function Class
4732414G09Rik	RIKEN cDNA 4732414G09 gene	within coordinates
Cpgi3228	CpG island 3228	1718 bp proximal
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	1577 bp downstream
Rr247151	regulatory region 247151	1397 bp proximal
Rr369285	regulatory region 369285	1383 bp downstream
Rr402708	regulatory region 402708	1954 bp upstream