rs29405834 SNP Detail

Summary

• ID
  rs29405834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5826520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AACAGTAGCC ATCACTGCCA
  R
  AACCTAGCCC TTACCTCTGA CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38714700	mCV23258086	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss131640155	ENSMUSSNP1911878	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss323549255	CHEV_11_5776523	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29405834					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5826520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	1376 bp proximal
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	1637 bp upstream
Rr442177	regulatory region 442177	895 bp proximal
Rr442178	regulatory region 442178	1762 bp proximal
Tssr100216	transcription start site region 100216	1848 bp upstream
Tssr106653	transcription start site region 106653	360 bp downstream
Tssr106654	transcription start site region 106654	1687 bp downstream
Tssr106655	transcription start site region 106655	1731 bp downstream