rs29405990 SNP Detail

Summary

• ID
  rs29405990
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57803879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT TTAGTGACAG TCTCTGCAGC
  W
  CCTAGCCCTA AGCTCACAGC GGCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38717359	mCV23857706	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss132183704	ENSMUSSNP5017952	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323686469	CHEV_11_57726555	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29405990					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57803879 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	1684 bp proximal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	1329 bp downstream
Rr234828	regulatory region 234828	122 bp proximal
Rr244432	regulatory region 244432	1107 bp distal
Rr244433	regulatory region 244433	770 bp distal
Rr250602	regulatory region 250602	within coordinates