rs29406102 SNP Detail

Summary

• ID
  rs29406102
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29474868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCATAG CTGTAGTCAT
  TTTGTTCCAT GCTCACAAAC TATTTTATAT TGAGGCTGTA ATATGCCTGC CAGTTATTGA
  CATAGAAAAA TAATTTGACT CAGAACAGGA TCATGCTGAC TGCATCTGTT AGGTTATGTT
  CTGAGGTTTA TTAATCTTAA GAAATTCCAC AAAATTTCAT GTAGGATCCA TGAGGTTAAA
  K
  GTCAATATGA ACTGTTATGT CTAAAATATC TTGAGTCTGA GTTGCCCAGT AGTCAGCATT
  TCCTGCACCT GTGTATGAAC TCGTTGTGGT TTTTTTCCTT TATAAGTTAA TAGGAAAGGA
  TATCCATTGT CATAGTTGAG ATAATTCTGA GCTGTCTCTG GTCTGACCAG TATTAGGATG
  TGCATTCAAT AAACTATTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38714936	mCV25279128	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss131895970	ENSMUSSNP4954100	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss323610901	CHEV_11_29424868	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29406102					SNP	G	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29474868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	1186 bp proximal
Gm57396	predicted gene, 57396	1111 bp downstream
Mtif2	mitochondrial translational initiation factor 2	1540 bp upstream
Rr369145	regulatory region 369145	1426 bp upstream
Rr444173	regulatory region 444173	955 bp proximal
Rr444174	regulatory region 444174	1506 bp proximal
Rr444175	regulatory region 444175	1600 bp proximal
Tssr100719	transcription start site region 100719	1539 bp upstream
Tssr100720	transcription start site region 100720	1555 bp upstream
Tssr107213	transcription start site region 107213	1475 bp downstream