rs29406391 SNP Detail

Summary

• ID
  rs29406391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104498983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCACTCC GCCCGCCCCG
  CTGTGTCCCA CCCACCCCGT CCCCTCCCTT CTTCCCTCCC CTCCGCAGGA AAAGCAGCTG
  CGGGTGCCAG GCTCGCCGTG GCGCGCGCGC GGCGTGAAGG GCGGCGGACA GGATGCGAGC
  GCAGTGGCCG GGACAACTCT GGGCCGCTCT GCTGGCGCTG GGGGCGCTGG CGGGCGTTGT
  Y
  GTTGGAGGTG AGCGAGTCGG GTGCGCGAAA TGCCGTAGGA CCCTGGGAAC CCGGAGCTAG
  GACTGAGAAG CAGAGGTGCG GGGGGCGGAT CCTTCTTCCC GTGGCCTCGA GGGCGCATCG
  CTGGTGGCGG AGATCCTGGC CTGGCCCGGG AAGCAGAGGA AAGATGGAGA TCCGCTGGGC
  CGTCCCGGTG CGCTGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38722981	mCV24560024	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132755772	ENSMUSSNP5291441	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29406391					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104498983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	within coordinates
Itgb3	integrin beta 3	within coordinates
Rr403025	regulatory region 403025	within coordinates
Rr457855	regulatory region 457855	147 bp distal
Rr457856	regulatory region 457856	1237 bp proximal
Rr457857	regulatory region 457857	1693 bp proximal
Tssr105409	transcription start site region 105409	345 bp downstream
Tssr105410	transcription start site region 105410	145 bp downstream
Tssr105411	transcription start site region 105411	120 bp downstream
Tssr105412	transcription start site region 105412	94 bp downstream