rs29406974 SNP Detail

Summary

• ID
  rs29406974
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75062836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACCCCTC TTTCCCCAGC TCCTAGATGT CAAAGTCCGA
  GGTGCACTCT ACTCCCCTCC TAAACCGGTC CAGTTTCTTG CCTCACCCCC CACCCCCCCC
  M
  CACACACACA CCAGGAGAGA GCGAGGATAC CACGGTGGCC AAATGGGAGT GATACCATCG
  CGGGGCATCT TCTGGCGTCA GAGGACTGTA GGGTCTAGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38714794	mCV24511379	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss132437120	ENSMUSSNP952151	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss323750379	CHEV_11_74985512	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29406974					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75062836 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	within coordinates
Cpgi3252	CpG island 3252	1087 bp distal
Cpgi3253	CpG island 3253	508 bp distal
Cpgi3254	CpG island 3254	66 bp proximal
Mir132	microRNA 132	1672 bp upstream
Mir212	microRNA 212	1378 bp upstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	1378 bp proximal
Rr402719	regulatory region 402719	988 bp upstream
Rr451077	regulatory region 451077	1339 bp distal
Rr451078	regulatory region 451078	within coordinates
Rr451079	regulatory region 451079	1203 bp proximal
Rr451080	regulatory region 451080	1704 bp proximal
Tssr102928	transcription start site region 102928	434 bp upstream
Tssr102929	transcription start site region 102929	461 bp upstream
Tssr102930	transcription start site region 102930	543 bp upstream