rs29407107 SNP Detail

Summary

• ID
  rs29407107
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGCTCCT CCATTGGGGG CCCTGTGATC CATCCAATAG
  CTGACTGTGA GCATCCACTT CTGTGTTTGC CAGGCCCCGG CATAGTTTCA CAAGAGACAG
  S
  CATATCTGGG TCCTTTTAGC AAAATCTTGC TAGTGTATGC AATGGTGTCA GCGTTTGGAA
  GCGGATTATG GGATGGATCC CCGGATATGG CAGTTTCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38722003	mCV24082112	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29407107					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	673 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	787 bp upstream
Rr369269	regulatory region 369269	484 bp upstream
Rr450320	regulatory region 450320	1029 bp distal
Rr450321	regulatory region 450321	990 bp distal
Rr450322	regulatory region 450322	316 bp proximal
Tssr102728	transcription start site region 102728	781 bp upstream
Tssr102729	transcription start site region 102729	1329 bp upstream
Tssr102730	transcription start site region 102730	1374 bp upstream
Tssr102731	transcription start site region 102731	1401 bp upstream