rs29407197 SNP Detail

Summary

• ID
  rs29407197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83337516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC CTCTAGGCCT CTCACCCTGC
  Y
  CATTGTAGTG GTGAGCAGAG ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38722825	mCV22342781	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132469351	ENSMUSSNP2361735	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	C
ss323767184	CHEV_11_83260192	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29407197					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83337516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3416	CpG island 3416	1369 bp distal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452961	regulatory region 452961	1448 bp distal
Rr452962	regulatory region 452962	917 bp proximal