rs29407314 SNP Detail

Summary

• ID
  rs29407314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACATTCT CTGGGAGAGA GGTTTGCAAG TTCAGGAGTT
  AGGGAAAGGA TAGAAGACTG AAGTGATATG GAGCAATTTA GGGTATTCTG AAAGATTTGT
  R
  GGTTACTGTA AATTGCAGTC CAGATCATTG GTGAAATTAT TATTTTGAGA CAGGTTCTCA
  CTCTGTAGGC CTGGCTTGCC TGGAACTCAC AGAGACCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38716796	mCV22952738	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132364051	ENSMUSSNP393048	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss323732626	CHEV_11_69835916	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29407314					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	553 bp distal
Cpgi3169	CpG island 3169	1437 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1319 bp downstream
Rr402686	regulatory region 402686	952 bp downstream
Rr450198	regulatory region 450198	1427 bp distal
Rr450199	regulatory region 450199	992 bp distal
Rr450200	regulatory region 450200	370 bp distal
Rr450201	regulatory region 450201	1111 bp proximal
Tssr102634	transcription start site region 102634	1508 bp upstream