rs29407344 SNP Detail

Summary

• ID
  rs29407344
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT CATAATTAAG CAAATGAAAG
  W
  ATGAAGCCTC GACTTGTATT GGGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38718790	mCV23860853	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss132181292	ENSMUSSNP3497314	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323685766	CHEV_11_57644303	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29407344					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	1059 bp distal
Cpgi2912	CpG island 2912	434 bp proximal
Cpgi2913	CpG island 2913	1881 bp proximal
Gm32915	predicted gene, 32915	1307 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1317 bp distal
Rr447814	regulatory region 447814	54 bp distal
Rr447815	regulatory region 447815	1336 bp proximal
Tssr3506	transcription start site region 3506	1530 bp upstream
Tssr101646	transcription start site region 101646	885 bp upstream
Tssr101647	transcription start site region 101647	893 bp upstream
Tssr101648	transcription start site region 101648	906 bp upstream
Tssr108123	transcription start site region 108123	1838 bp upstream
Tssr108124	transcription start site region 108124	1781 bp upstream
Tssr108125	transcription start site region 108125	1736 bp upstream
Tssr108126	transcription start site region 108126	1555 bp upstream
Tssr108127	transcription start site region 108127	1488 bp upstream
Tssr108128	transcription start site region 108128	1476 bp upstream
Tssr108129	transcription start site region 108129	1341 bp upstream
Tssr108130	transcription start site region 108130	962 bp downstream
Tssr108131	transcription start site region 108131	1203 bp downstream
Tssr108132	transcription start site region 108132	1283 bp downstream
Tssr108133	transcription start site region 108133	1341 bp downstream
Tssr108134	transcription start site region 108134	1878 bp downstream