rs29407401 SNP Detail

Summary

• ID
  rs29407401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69049689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACATCTT GAGGCCCAGG GAGCACTATC AGCTCATGCA
  GGGAGCACTA TCAGCTCATG CAGAGAGCAT TCCCAGATCC TGAGGCCCAG GGAGCTCTAT
  Y
  AGCTCATGCA GAGACTATTC CCACATCTTG AGGCCCAGGG ATCACTATCA GCCTCATGCA
  GAGAGCATTC CCAGATCCTG AGGCCCAGGG AGCACTATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38719004	mCV24154647	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132350060	ENSMUSSNP3705709	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	C
ss323727824	CHEV_11_68972365	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29407401					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69049689 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	1528 bp distal
Rr449891	regulatory region 449891	1864 bp distal
Rr449892	regulatory region 449892	1593 bp distal
Rr449893	regulatory region 449893	733 bp distal
Tssr102419	transcription start site region 102419	1962 bp downstream
Tssr102420	transcription start site region 102420	1947 bp downstream
Tssr102421	transcription start site region 102421	1812 bp downstream
Tssr102422	transcription start site region 102422	1802 bp downstream
Tssr102423	transcription start site region 102423	1782 bp downstream
Tssr102424	transcription start site region 102424	1753 bp downstream