rs29407606 SNP Detail

Summary

• ID
  rs29407606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51182486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAATGAAC CTTGCTTGTG GGAGAGGAAG CAGGGGGCAG
  GTGTACTATC TACCACCTGT TCCCTAAGCT GTGCCCTGCT ATGGTCTTTG CTACTTTACT
  R
  AGCTGTGCAA TGCTAGGGGC ACAGCTCAGG GAGAAGGCTG ACTTAGATTA TGCAAGTCCT
  TGGGTTAGAC TCCTGACATC AGATATTGAG CTGTGTACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38722849	mCV23306653	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29407606					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51182486 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	within coordinates
Cpgi2834	CpG island 2834	729 bp distal
Tssr101277	transcription start site region 101277	1905 bp downstream
Tssr101278	transcription start site region 101278	1648 bp downstream