rs29407651 SNP Detail

Summary

• ID
  rs29407651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GACGTGGGGA GGTGGGGATC
  Y
  AGGGACAGGG CTCTGGGATG GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38717691	mCV22890852	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss323817101	CHEV_11_94814411	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29407651					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843923 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	55 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	221 bp proximal
Gm74287	predicted gene, 74287	1154 bp downstream
Rr454892	regulatory region 454892	531 bp distal
Tssr3647	transcription start site region 3647	1113 bp downstream
Tssr104277	transcription start site region 104277	1947 bp downstream
Tssr104278	transcription start site region 104278	1926 bp downstream
Tssr104279	transcription start site region 104279	1869 bp downstream
Tssr104280	transcription start site region 104280	1857 bp downstream
Tssr104281	transcription start site region 104281	1843 bp downstream
Tssr104282	transcription start site region 104282	1773 bp downstream
Tssr104283	transcription start site region 104283	1620 bp downstream
Tssr104284	transcription start site region 104284	1560 bp downstream
Tssr104285	transcription start site region 104285	1530 bp downstream
Tssr104286	transcription start site region 104286	1497 bp downstream
Tssr104287	transcription start site region 104287	1473 bp downstream
Tssr104288	transcription start site region 104288	1433 bp downstream
Tssr104289	transcription start site region 104289	1425 bp downstream
Tssr104290	transcription start site region 104290	1377 bp downstream
Tssr104291	transcription start site region 104291	1362 bp downstream
Tssr104292	transcription start site region 104292	1265 bp downstream
Tssr104293	transcription start site region 104293	1158 bp downstream
Tssr104294	transcription start site region 104294	1124 bp downstream
Tssr104295	transcription start site region 104295	1080 bp downstream
Tssr104296	transcription start site region 104296	1056 bp downstream
Tssr104297	transcription start site region 104297	1033 bp downstream
Tssr104298	transcription start site region 104298	999 bp downstream
Tssr104299	transcription start site region 104299	965 bp downstream
Tssr104300	transcription start site region 104300	945 bp downstream
Tssr104301	transcription start site region 104301	825 bp downstream
Tssr104302	transcription start site region 104302	811 bp downstream
Tssr104303	transcription start site region 104303	792 bp downstream
Tssr104304	transcription start site region 104304	750 bp downstream
Tssr104305	transcription start site region 104305	728 bp downstream
Tssr104306	transcription start site region 104306	713 bp downstream
Tssr104307	transcription start site region 104307	696 bp downstream
Tssr104308	transcription start site region 104308	623 bp downstream
Tssr104309	transcription start site region 104309	599 bp downstream
Tssr104310	transcription start site region 104310	513 bp downstream
Tssr104311	transcription start site region 104311	464 bp downstream
Tssr104312	transcription start site region 104312	395 bp downstream
Tssr104313	transcription start site region 104313	379 bp downstream
Tssr104314	transcription start site region 104314	22 bp upstream
Tssr110223	transcription start site region 110223	1840 bp upstream
Tssr110224	transcription start site region 110224	1776 bp upstream
Tssr110225	transcription start site region 110225	1560 bp upstream
Tssr110226	transcription start site region 110226	1520 bp upstream
Tssr110227	transcription start site region 110227	1507 bp upstream
Tssr110228	transcription start site region 110228	1447 bp upstream
Tssr110229	transcription start site region 110229	1427 bp upstream
Tssr110230	transcription start site region 110230	1390 bp upstream