rs29407738 SNP Detail

Summary

• ID
  rs29407738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11507244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAAGTTGG AAGACAATAA AAGGTCTCCT CAAAATGATT
  GATTTTTTTT TTCTGCCATG GTGAATGGGA GGAAATCAGG GGTTATATTT CCAAATTACT
  Y
  CTTGTAACAA TAATAGTTAC CGGAAGAACT GAGCTTCTAA CTGAACCCAG CCTGCACATG
  AGGTAAATGG ACGCCAGGTG GCAGTAGCAA CTGGCTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38721655	mCV24438533	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss131686839	ENSMUSSNP197858	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323561265	CHEV_11_11457247	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29407738					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11507244 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	166 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	within coordinates
Rr442717	regulatory region 442717	within coordinates
Rr442718	regulatory region 442718	67 bp proximal
Rr442719	regulatory region 442719	185 bp proximal
Rr442720	regulatory region 442720	599 bp proximal
Rr442721	regulatory region 442721	712 bp proximal
Rr442722	regulatory region 442722	1308 bp proximal
Tssr100349	transcription start site region 100349	144 bp upstream
Tssr100350	transcription start site region 100350	157 bp upstream
Tssr100351	transcription start site region 100351	688 bp upstream
Tssr100352	transcription start site region 100352	763 bp upstream