rs29407842 SNP Detail

Summary

• ID
  rs29407842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCATTTCC TGTCAAGTCC GAGAGCCTTA GTTTCATCCT
  TGTAACTCAT GTGATAGAAG GAGAACCAGC CCCCTAAAAT TGTTCTCTGA CCTCCCCATG
  M
  GTACCATAGC ACACACAATT GTGTGCTCAC ACGCACAAAT AAAGGTGATA AAAATTTAAG
  CAAAAGAAAA AATATTTCTT AATATAGGGC AAGGGTTTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38720257	mCV22952761	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss132364083	ENSMUSSNP6258862	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss323732634	CHEV_11_69836592	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29407842					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	1229 bp distal
Cpgi3169	CpG island 3169	761 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1995 bp downstream
Rr402686	regulatory region 402686	1628 bp downstream
Rr450199	regulatory region 450199	1668 bp distal
Rr450200	regulatory region 450200	1046 bp distal
Rr450201	regulatory region 450201	435 bp proximal
Tssr102634	transcription start site region 102634	832 bp upstream