rs29408008 SNP Detail

Summary

• ID
  rs29408008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83302872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG CACTTACCTC CTGAGAGTCT
  Y
  AAAATTAAGA TGTCCAGAAT ATGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38717882	mCV23452936	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss132468887	ENSMUSSNP6174538	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323767082	CHEV_11_83225548	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29408008					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83302872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	1688 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144	314 bp distal
Gm72478	predicted gene, 72478	1410 bp upstream
Rasl10b	RAS-like, family 10, member B	Intron
Rr452948	regulatory region 452948	1964 bp distal
Rr452949	regulatory region 452949	1829 bp distal
Rr452950	regulatory region 452950	1393 bp distal